Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SIGLEC22P-201ENST00000599104 714 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC14.88□□□□□ -0.03
HMGA1P17096 MIR6858-201ENST00000620733 67 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HMGA1P17096 RPL13AP3-202ENST00000494676 1473 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HMGA1P17096 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGA1P17096 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HMGA1P17096 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HMGA1P17096 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HMGA1P17096 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HMGA1P17096 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGA1P17096 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 AC103592.1-201ENST00000394513 664 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 AL354861.1-201ENST00000445213 355 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGA1P17096 KRT18P15-201ENST00000458108 1291 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.87□□□□□ -0.03
HMGA1P17096 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.87□□□□□ -0.03
HMGA1P17096 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGA1P17096 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC007952.4-201ENST00000573866 637 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 MIR4750-201ENST00000584564 56 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
HMGA1P17096 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC073911.3-201ENST00000624401 631 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HMGA1P17096 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HMGA1P17096 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGA1P17096 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGA1P17096 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGA1P17096 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 AC106881.1-201ENST00000605849 3329 ntBASIC14.87□□□□□ -0.03
HMGA1P17096 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGA1P17096 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 FTX-216ENST00000638985 1367 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 HSPA8P5-201ENST00000456928 2069 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HMGA1P17096 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms