Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC135983.4-201ENST00000564116 1262 ntBASIC18.73■□□□□ 0.59
COL3A1P02461 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC18.73■□□□□ 0.59
COL3A1P02461 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.73■□□□□ 0.59
COL3A1P02461 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC18.73■□□□□ 0.59
COL3A1P02461 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL3A1P02461 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
COL3A1P02461 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 AC004554.1-201ENST00000422830 1468 ntBASIC18.72■□□□□ 0.59
COL3A1P02461 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC18.72■□□□□ 0.59
COL3A1P02461 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.72■□□□□ 0.59
COL3A1P02461 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC18.72■□□□□ 0.59
COL3A1P02461 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL3A1P02461 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 AC104784.1-201ENST00000473096 294 ntBASIC18.72■□□□□ 0.59
COL3A1P02461 MIR4649-201ENST00000582839 64 ntBASIC18.72■□□□□ 0.59
COL3A1P02461 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC18.72■□□□□ 0.59
COL3A1P02461 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.72■□□□□ 0.59
COL3A1P02461 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
COL3A1P02461 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.72■□□□□ 0.59
COL3A1P02461 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL3A1P02461 AL928654.5-201ENST00000624831 2501 ntBASIC18.72■□□□□ 0.59
COL3A1P02461 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL3A1P02461 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 AC138761.6-201ENST00000583997 1423 ntBASIC18.72■□□□□ 0.59
COL3A1P02461 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC18.72■□□□□ 0.59
COL3A1P02461 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL3A1P02461 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
COL3A1P02461 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC18.71■□□□□ 0.59
COL3A1P02461 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC18.71■□□□□ 0.59
COL3A1P02461 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.71■□□□□ 0.59
COL3A1P02461 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC18.71■□□□□ 0.59
COL3A1P02461 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC18.71■□□□□ 0.59
COL3A1P02461 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.71■□□□□ 0.59
COL3A1P02461 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.71■□□□□ 0.59
COL3A1P02461 AL049840.2-201ENST00000602722 535 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 RN7SL736P-201ENST00000613111 269 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
COL3A1P02461 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL3A1P02461 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC18.71■□□□□ 0.59
COL3A1P02461 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 AL928921.2-201ENST00000641325 2442 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.71■□□□□ 0.59
COL3A1P02461 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL3A1P02461 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL3A1P02461 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC18.71■□□□□ 0.59
COL3A1P02461 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 PES1P2-201ENST00000449745 1735 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 SALL4P6-201ENST00000429385 1691 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC18.71■□□□□ 0.59
COL3A1P02461 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC18.71■□□□□ 0.59
COL3A1P02461 GGTLC4P-201ENST00000402176 664 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC18.71■□□□□ 0.59
COL3A1P02461 STK24P1-201ENST00000455035 1291 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.71■□□□□ 0.59
COL3A1P02461 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.71■□□□□ 0.59
COL3A1P02461 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL3A1P02461 AC145285.5-201ENST00000562217 361 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 NT5C-204ENST00000578337 582 ntTSL 2 BASIC18.71■□□□□ 0.59
COL3A1P02461 NUDT4P2-201ENST00000578341 546 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 MIR3180-2-201ENST00000581748 88 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL3A1P02461 AC087392.5-201ENST00000612517 489 ntBASIC18.71■□□□□ 0.59
COL3A1P02461 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.71■□□□□ 0.58
COL3A1P02461 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms