Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC006453.4-201ENST00000636949 1252 ntBASIC14.24□□□□□ -0.13
SIX3O95343 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 AC009093.10-201ENST00000641956 1442 ntBASIC14.24□□□□□ -0.13
SIX3O95343 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 AC107918.4-201ENST00000641966 3141 ntBASIC14.24□□□□□ -0.13
SIX3O95343 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SIX3O95343 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.23□□□□□ -0.13
SIX3O95343 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.23□□□□□ -0.13
SIX3O95343 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 CD8B2-202ENST00000417670 633 ntBASIC14.23□□□□□ -0.13
SIX3O95343 AC016694.1-201ENST00000434179 700 ntBASIC14.23□□□□□ -0.13
SIX3O95343 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.23□□□□□ -0.13
SIX3O95343 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.23□□□□□ -0.13
SIX3O95343 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.23□□□□□ -0.13
SIX3O95343 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
SIX3O95343 RN7SL713P-201ENST00000582127 302 ntBASIC14.23□□□□□ -0.13
SIX3O95343 BTNL10-201ENST00000595971 695 ntBASIC14.23□□□□□ -0.13
SIX3O95343 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.23□□□□□ -0.13
SIX3O95343 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.23□□□□□ -0.13
SIX3O95343 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.23□□□□□ -0.13
SIX3O95343 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
SIX3O95343 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.23□□□□□ -0.13
SIX3O95343 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SIX3O95343 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
SIX3O95343 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 AL512384.1-201ENST00000406683 331 ntBASIC14.22□□□□□ -0.13
SIX3O95343 CNN2P8-201ENST00000421872 913 ntBASIC14.22□□□□□ -0.13
SIX3O95343 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SIX3O95343 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 AP005018.1-201ENST00000525475 301 ntBASIC14.22□□□□□ -0.13
SIX3O95343 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.22□□□□□ -0.13
SIX3O95343 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SIX3O95343 KRT90P-201ENST00000549264 1064 ntBASIC14.22□□□□□ -0.13
SIX3O95343 AC005586.2-201ENST00000563946 837 ntBASIC14.22□□□□□ -0.13
SIX3O95343 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.22□□□□□ -0.13
SIX3O95343 AC027307.3-201ENST00000594262 1100 ntBASIC14.22□□□□□ -0.13
SIX3O95343 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms