Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 DUXAP7-201ENST00000431038 689 ntBASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AP000812.2-201ENST00000538934 718 ntBASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC106886.1-201ENST00000568660 600 ntBASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC023510.2-201ENST00000622162 746 ntBASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC009093.2-202ENST00000620513 2079 ntBASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 AC020910.6-201ENST00000623084 1459 ntBASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
VPS9D1Q9Y2B5 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 AC092964.1-201ENST00000623304 1399 ntBASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ATG10-IT1-201ENST00000396880 487 ntBASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ELL2P2-201ENST00000515135 694 ntBASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 AC005225.4-201ENST00000557330 545 ntBASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 AC244669.2-201ENST00000612320 853 ntBASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 AC105233.6-201ENST00000642093 218 ntBASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS9D1Q9Y2B5 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms