Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.35□□□□□ -0.43
COL12A1Q99715 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL12A1Q99715 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC12.35□□□□□ -0.43
COL12A1Q99715 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC12.35□□□□□ -0.43
COL12A1Q99715 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL12A1Q99715 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC12.35□□□□□ -0.43
COL12A1Q99715 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.34□□□□□ -0.43
COL12A1Q99715 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 U3.41-201ENST00000408711 219 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 RN7SL487P-201ENST00000468140 344 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 AC145285.5-201ENST00000562217 361 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.34□□□□□ -0.43
COL12A1Q99715 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
COL12A1Q99715 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC12.34□□□□□ -0.43
COL12A1Q99715 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 RN7SKP212-201ENST00000410851 328 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC12.34□□□□□ -0.43
COL12A1Q99715 DNM1P46-202ENST00000415963 882 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC12.34□□□□□ -0.43
COL12A1Q99715 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC12.34□□□□□ -0.43
COL12A1Q99715 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
COL12A1Q99715 AL353708.1-201ENST00000567904 1257 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 FAM223B-202ENST00000598177 713 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 HPX-213ENST00000615166 826 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
COL12A1Q99715 FAM223A-202ENST00000625204 713 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 AC002511.3-201ENST00000638098 420 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
COL12A1Q99715 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.34□□□□□ -0.43
COL12A1Q99715 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC12.34□□□□□ -0.43
COL12A1Q99715 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC12.34□□□□□ -0.43
COL12A1Q99715 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 AC103724.2-201ENST00000520355 476 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL12A1Q99715 PRR20FP-201ENST00000603320 180 ntBASIC12.34□□□□□ -0.43
COL12A1Q99715 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC12.34□□□□□ -0.43
COL12A1Q99715 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
COL12A1Q99715 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
COL12A1Q99715 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 STX6-204ENST00000542060 4809 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms