Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 MIR3677-201ENST00000578964 60 ntBASIC14.04□□□□□ -0.16
COL28A1Q2UY09 MIR4783-201ENST00000580343 82 ntBASIC14.04□□□□□ -0.16
COL28A1Q2UY09 AC107464.3-201ENST00000609172 737 ntBASIC14.04□□□□□ -0.16
COL28A1Q2UY09 AC087392.5-201ENST00000612517 489 ntBASIC14.04□□□□□ -0.16
COL28A1Q2UY09 AC233280.19-201ENST00000633223 136 ntBASIC14.04□□□□□ -0.16
COL28A1Q2UY09 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 AC091951.1-201ENST00000512854 2465 ntBASIC14.04□□□□□ -0.16
COL28A1Q2UY09 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
COL28A1Q2UY09 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 AC138969.2-201ENST00000532739 9932 ntBASIC14.03□□□□□ -0.16
COL28A1Q2UY09 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 AC026320.2-201ENST00000434379 478 ntBASIC14.03□□□□□ -0.16
COL28A1Q2UY09 EIF3FP3-201ENST00000434851 1086 ntBASIC14.03□□□□□ -0.16
COL28A1Q2UY09 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 MRPL37P1-201ENST00000592451 1337 ntBASIC14.03□□□□□ -0.16
COL28A1Q2UY09 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.03□□□□□ -0.16
COL28A1Q2UY09 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
COL28A1Q2UY09 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms