Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.43■□□□□ 0.06
LIG3P49916 ARSEP1-201ENST00000420443 635 ntBASIC15.43■□□□□ 0.06
LIG3P49916 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.43■□□□□ 0.06
LIG3P49916 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.43■□□□□ 0.06
LIG3P49916 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.43■□□□□ 0.06
LIG3P49916 AC068587.3-201ENST00000526613 355 ntBASIC15.43■□□□□ 0.06
LIG3P49916 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.43■□□□□ 0.06
LIG3P49916 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.43■□□□□ 0.06
LIG3P49916 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.43■□□□□ 0.06
LIG3P49916 AC233724.13-201ENST00000598383 410 ntBASIC15.43■□□□□ 0.06
LIG3P49916 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.43■□□□□ 0.06
LIG3P49916 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.43■□□□□ 0.06
LIG3P49916 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
LIG3P49916 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 AC018665.1-201ENST00000622927 1362 ntBASIC15.43■□□□□ 0.06
LIG3P49916 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 MSTO2P-201ENST00000314835 1709 ntBASIC15.43■□□□□ 0.06
LIG3P49916 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LIG3P49916 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.43■□□□□ 0.06
LIG3P49916 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 AL731571.1-201ENST00000617058 5428 ntBASIC15.42■□□□□ 0.06
LIG3P49916 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.42■□□□□ 0.06
LIG3P49916 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 BAATP1-201ENST00000412284 1225 ntBASIC15.42■□□□□ 0.06
LIG3P49916 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.42■□□□□ 0.06
LIG3P49916 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.42■□□□□ 0.06
LIG3P49916 ACA64.2-201ENST00000459014 129 ntBASIC15.42■□□□□ 0.06
LIG3P49916 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.42■□□□□ 0.06
LIG3P49916 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.42■□□□□ 0.06
LIG3P49916 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.42■□□□□ 0.06
LIG3P49916 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 BX539320.1-201ENST00000623759 877 ntBASIC15.42■□□□□ 0.06
LIG3P49916 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LIG3P49916 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
LIG3P49916 AC015818.8-201ENST00000587907 1519 ntBASIC15.42■□□□□ 0.06
LIG3P49916 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIG3P49916 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.42■□□□□ 0.06
LIG3P49916 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms