Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CR1P49238 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 ZBTB12BP-201ENST00000314232 1122 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CX3CR1P49238 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
CX3CR1P49238 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 BCRP2-202ENST00000447763 634 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.85□□□□□ -0.35
CX3CR1P49238 ALG3P1-201ENST00000508806 1114 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 BCRP6-201ENST00000510112 632 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 BCRP7-201ENST00000511549 544 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.85□□□□□ -0.35
CX3CR1P49238 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.85□□□□□ -0.35
CX3CR1P49238 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 SORD2P-201ENST00000558556 1069 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC12.85□□□□□ -0.35
CX3CR1P49238 AC015936.2-201ENST00000593177 259 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 OR10B1P-201ENST00000601666 907 ntBASIC12.85□□□□□ -0.35
CX3CR1P49238 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CX3CR1P49238 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CX3CR1P49238 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CR1P49238 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CR1P49238 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
CX3CR1P49238 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CR1P49238 CICP20-201ENST00000443330 2801 ntBASIC12.84□□□□□ -0.35
CX3CR1P49238 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 ANKRD30BP2-201ENST00000435744 1610 ntBASIC12.84□□□□□ -0.35
CX3CR1P49238 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
CX3CR1P49238 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 HSPA8P5-201ENST00000456928 2069 ntBASIC12.84□□□□□ -0.35
CX3CR1P49238 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC12.84□□□□□ -0.35
CX3CR1P49238 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
CX3CR1P49238 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC12.84□□□□□ -0.35
CX3CR1P49238 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.84□□□□□ -0.35
CX3CR1P49238 RNA5SP486-201ENST00000515961 83 ntBASIC12.84□□□□□ -0.35
CX3CR1P49238 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC12.84□□□□□ -0.35
CX3CR1P49238 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC12.84□□□□□ -0.35
CX3CR1P49238 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC12.84□□□□□ -0.35
CX3CR1P49238 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC12.84□□□□□ -0.35
CX3CR1P49238 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 AC025048.6-201ENST00000634326 1161 ntBASIC12.84□□□□□ -0.35
CX3CR1P49238 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CR1P49238 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CR1P49238 HPD-204ENST00000543163 1709 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CR1P49238 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms