Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.28■□□□□ 0.2
CIITAP33076 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.28■□□□□ 0.2
CIITAP33076 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.28■□□□□ 0.2
CIITAP33076 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 AC091812.3-201ENST00000621362 345 ntBASIC16.28■□□□□ 0.2
CIITAP33076 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CIITAP33076 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.28■□□□□ 0.2
CIITAP33076 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.28■□□□□ 0.2
CIITAP33076 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CIITAP33076 AC007952.5-201ENST00000572818 1486 ntBASIC16.28■□□□□ 0.2
CIITAP33076 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
CIITAP33076 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
CIITAP33076 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 AC126755.1-201ENST00000525846 6405 ntBASIC16.27■□□□□ 0.2
CIITAP33076 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.27■□□□□ 0.2
CIITAP33076 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 TUBB8P4-201ENST00000511806 1324 ntBASIC16.27■□□□□ 0.2
CIITAP33076 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CIITAP33076 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CIITAP33076 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CIITAP33076 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CIITAP33076 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.27■□□□□ 0.2
CIITAP33076 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.27■□□□□ 0.2
CIITAP33076 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CIITAP33076 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CIITAP33076 AL353637.1-201ENST00000451571 732 ntBASIC16.27■□□□□ 0.2
CIITAP33076 RN7SL530P-201ENST00000485097 298 ntBASIC16.27■□□□□ 0.2
CIITAP33076 NUP210P1-202ENST00000504322 710 ntBASIC16.27■□□□□ 0.2
CIITAP33076 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.27■□□□□ 0.2
CIITAP33076 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CIITAP33076 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.27■□□□□ 0.2
CIITAP33076 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.27■□□□□ 0.2
CIITAP33076 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.27■□□□□ 0.2
CIITAP33076 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.27■□□□□ 0.2
CIITAP33076 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.27■□□□□ 0.2
CIITAP33076 MIR4754-201ENST00000582477 89 ntBASIC16.27■□□□□ 0.2
CIITAP33076 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.27■□□□□ 0.2
CIITAP33076 AC097724.1-201ENST00000609581 426 ntBASIC16.27■□□□□ 0.2
CIITAP33076 AL353770.1-201ENST00000614915 403 ntBASIC16.27■□□□□ 0.2
CIITAP33076 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CIITAP33076 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.19
CIITAP33076 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CIITAP33076 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CIITAP33076 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CIITAP33076 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
CIITAP33076 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC16.27■□□□□ 0.19
CIITAP33076 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CIITAP33076 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CIITAP33076 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CIITAP33076 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
CIITAP33076 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CIITAP33076 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC16.26■□□□□ 0.19
CIITAP33076 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.26■□□□□ 0.19
CIITAP33076 HSPA7-201ENST00000445535 1927 ntBASIC16.26■□□□□ 0.19
CIITAP33076 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CIITAP33076 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 KRT18P15-201ENST00000458108 1291 ntBASIC16.26■□□□□ 0.19
CIITAP33076 RN7SL258P-201ENST00000478664 300 ntBASIC16.26■□□□□ 0.19
CIITAP33076 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.26■□□□□ 0.19
CIITAP33076 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CIITAP33076 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 PHBP15-201ENST00000574228 665 ntBASIC16.26■□□□□ 0.19
CIITAP33076 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.26■□□□□ 0.19
CIITAP33076 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.26■□□□□ 0.19
CIITAP33076 AC020922.3-201ENST00000595064 547 ntBASIC16.26■□□□□ 0.19
CIITAP33076 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CIITAP33076 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms