Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HOXC9P31274 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC18.93■□□□□ 0.62
HOXC9P31274 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXC9P31274 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
HOXC9P31274 AC244250.3-201ENST00000620749 366 ntBASIC18.93■□□□□ 0.62
HOXC9P31274 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXC9P31274 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HOXC9P31274 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXC9P31274 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HOXC9P31274 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HOXC9P31274 CTBP2P8-201ENST00000422584 1330 ntBASIC18.93■□□□□ 0.62
HOXC9P31274 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 AC090505.1-201ENST00000430515 1834 ntBASIC18.93■□□□□ 0.62
HOXC9P31274 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC9P31274 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC18.92■□□□□ 0.62
HOXC9P31274 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
HOXC9P31274 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
HOXC9P31274 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC18.92■□□□□ 0.62
HOXC9P31274 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC18.92■□□□□ 0.62
HOXC9P31274 AC092573.1-201ENST00000433054 884 ntBASIC18.92■□□□□ 0.62
HOXC9P31274 AC006529.1-201ENST00000459978 637 ntBASIC18.92■□□□□ 0.62
HOXC9P31274 RN7SL375P-201ENST00000492442 298 ntBASIC18.92■□□□□ 0.62
HOXC9P31274 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC18.92■□□□□ 0.62
HOXC9P31274 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC9P31274 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC9P31274 AL132994.1-201ENST00000554098 400 ntBASIC18.92■□□□□ 0.62
HOXC9P31274 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC18.92■□□□□ 0.62
HOXC9P31274 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HOXC9P31274 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC9P31274 HPD-204ENST00000543163 1709 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXC9P31274 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HOXC9P31274 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
HOXC9P31274 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
HOXC9P31274 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC9P31274 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC9P31274 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC9P31274 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC9P31274 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC9P31274 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC9P31274 AC011247.3-201ENST00000603297 438 ntBASIC18.91■□□□□ 0.62
HOXC9P31274 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC18.91■□□□□ 0.62
HOXC9P31274 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXC9P31274 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC9P31274 AC144831.1-201ENST00000573312 2656 ntBASIC18.91■□□□□ 0.62
HOXC9P31274 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC9P31274 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC9P31274 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
HOXC9P31274 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXC9P31274 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC9P31274 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
HOXC9P31274 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HOXC9P31274 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HOXC9P31274 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
HOXC9P31274 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 AL672207.1-201ENST00000328462 1570 ntBASIC18.9■□□□□ 0.62
HOXC9P31274 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 NHP2-202ENST00000314397 599 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC9P31274 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HOXC9P31274 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HOXC9P31274 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HOXC9P31274 RPL3P2-204ENST00000413027 1203 ntBASIC18.9■□□□□ 0.62
HOXC9P31274 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXC9P31274 STK24P1-201ENST00000455035 1291 ntBASIC18.9■□□□□ 0.62
HOXC9P31274 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC9P31274 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC9P31274 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HOXC9P31274 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms