Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 TCAF1P1-201ENST00000414990 2232 ntBASIC16.82■□□□□ 0.28
LIG1P18858 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LIG1P18858 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.81■□□□□ 0.28
LIG1P18858 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.81■□□□□ 0.28
LIG1P18858 CTBP2P5-201ENST00000454986 1264 ntBASIC16.81■□□□□ 0.28
LIG1P18858 AC007551.1-201ENST00000457394 519 ntBASIC16.81■□□□□ 0.28
LIG1P18858 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 GCOM2-201ENST00000509133 1104 ntBASIC16.81■□□□□ 0.28
LIG1P18858 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.81■□□□□ 0.28
LIG1P18858 AC103988.2-201ENST00000561804 725 ntBASIC16.81■□□□□ 0.28
LIG1P18858 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.81■□□□□ 0.28
LIG1P18858 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.81■□□□□ 0.28
LIG1P18858 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LIG1P18858 MIR6775-201ENST00000617557 69 ntBASIC16.81■□□□□ 0.28
LIG1P18858 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 HADH-202ENST00000403312 1752 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG1P18858 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG1P18858 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG1P18858 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.8■□□□□ 0.28
LIG1P18858 ANKRD19P-201ENST00000338192 862 ntBASIC16.8■□□□□ 0.28
LIG1P18858 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 AC092933.1-201ENST00000393644 945 ntBASIC16.8■□□□□ 0.28
LIG1P18858 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.8■□□□□ 0.28
LIG1P18858 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.8■□□□□ 0.28
LIG1P18858 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
LIG1P18858 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.8■□□□□ 0.28
LIG1P18858 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 AC106886.1-201ENST00000568660 600 ntBASIC16.8■□□□□ 0.28
LIG1P18858 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.8■□□□□ 0.28
LIG1P18858 AP001002.3-201ENST00000623482 206 ntBASIC16.8■□□□□ 0.28
LIG1P18858 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 AL603764.1-201ENST00000636452 321 ntBASIC16.8■□□□□ 0.28
LIG1P18858 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC16.8■□□□□ 0.28
LIG1P18858 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
LIG1P18858 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG1P18858 AC020910.5-201ENST00000623668 1865 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms