Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.9□□□□□ -0.02
HMGA1P17096 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGA1P17096 AC138701.2-201ENST00000553634 226 ntBASIC14.9□□□□□ -0.02
HMGA1P17096 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC14.9□□□□□ -0.02
HMGA1P17096 AC107464.3-201ENST00000609172 737 ntBASIC14.9□□□□□ -0.02
HMGA1P17096 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGA1P17096 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGA1P17096 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.9□□□□□ -0.02
HMGA1P17096 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.9□□□□□ -0.02
HMGA1P17096 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
HMGA1P17096 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGA1P17096 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
HMGA1P17096 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
HMGA1P17096 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGA1P17096 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
HMGA1P17096 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGA1P17096 ERP29P1-201ENST00000442902 706 ntBASIC14.89□□□□□ -0.03
HMGA1P17096 AC018638.5-201ENST00000450885 754 ntBASIC14.89□□□□□ -0.03
HMGA1P17096 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC14.89□□□□□ -0.03
HMGA1P17096 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.89□□□□□ -0.03
HMGA1P17096 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 MIR3180-2-201ENST00000581748 88 ntBASIC14.89□□□□□ -0.03
HMGA1P17096 MIR2392-201ENST00000584881 84 ntBASIC14.89□□□□□ -0.03
HMGA1P17096 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGA1P17096 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 AC012617.1-204ENST00000586340 2305 ntBASIC14.89□□□□□ -0.03
HMGA1P17096 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
HMGA1P17096 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGA1P17096 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 SHMT1P1-201ENST00000419974 1312 ntBASIC14.89□□□□□ -0.03
HMGA1P17096 TEKT4P2-202ENST00000559466 1312 ntBASIC14.89□□□□□ -0.03
HMGA1P17096 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGA1P17096 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HMGA1P17096 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGA1P17096 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
HMGA1P17096 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HMGA1P17096 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HMGA1P17096 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGA1P17096 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGA1P17096 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HMGA1P17096 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 BX679664.3-201ENST00000414070 555 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 PPP1R2P4-201ENST00000424051 595 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.88□□□□□ -0.03
HMGA1P17096 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.88□□□□□ -0.03
HMGA1P17096 AC113935.1-201ENST00000471722 555 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGA1P17096 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HMGA1P17096 HERC2P11-201ENST00000562845 725 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 AC100756.2-201ENST00000569537 736 ntBASIC14.88□□□□□ -0.03
HMGA1P17096 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms