Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB1P09429 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB1P09429 KLF2P1-201ENST00000447438 1042 ntBASIC17.15■□□□□ 0.34
HMGB1P09429 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGB1P09429 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGB1P09429 TUBB8P8-201ENST00000458717 1058 ntBASIC17.15■□□□□ 0.34
HMGB1P09429 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGB1P09429 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 TMEM198B-204ENST00000484016 896 ntBASIC17.15■□□□□ 0.34
HMGB1P09429 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.15■□□□□ 0.34
HMGB1P09429 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGB1P09429 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 LINC01922-201ENST00000562582 719 ntBASIC17.15■□□□□ 0.34
HMGB1P09429 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.15■□□□□ 0.34
HMGB1P09429 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB1P09429 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB1P09429 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB1P09429 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HMGB1P09429 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB1P09429 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
HMGB1P09429 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HMGB1P09429 ABR-205ENST00000544583 5595 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGB1P09429 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
HMGB1P09429 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGB1P09429 AC144522.1-201ENST00000625111 1658 ntBASIC17.14■□□□□ 0.33
HMGB1P09429 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.14■□□□□ 0.33
HMGB1P09429 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC17.14■□□□□ 0.33
HMGB1P09429 MIR658-201ENST00000385210 100 ntBASIC17.14■□□□□ 0.33
HMGB1P09429 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 HSPB1P2-201ENST00000448722 546 ntBASIC17.14■□□□□ 0.33
HMGB1P09429 Z93015.1-201ENST00000451718 390 ntBASIC17.14■□□□□ 0.33
HMGB1P09429 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HMGB1P09429 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.14■□□□□ 0.33
HMGB1P09429 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGB1P09429 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB1P09429 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGB1P09429 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC17.13■□□□□ 0.33
HMGB1P09429 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB1P09429 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB1P09429 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 MTX1P1-201ENST00000440904 838 ntBASIC17.13■□□□□ 0.33
HMGB1P09429 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.13■□□□□ 0.33
HMGB1P09429 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB1P09429 IGHV3-71-201ENST00000523324 359 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms