Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 KRT17P5-201ENST00000332088 839 ntBASIC14.15□□□□□ -0.14
TNFP01375 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
TNFP01375 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.15□□□□□ -0.14
TNFP01375 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.15□□□□□ -0.14
TNFP01375 NOC2LP1-201ENST00000450578 752 ntBASIC14.15□□□□□ -0.14
TNFP01375 RN7SL277P-201ENST00000481521 288 ntBASIC14.15□□□□□ -0.14
TNFP01375 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.15□□□□□ -0.14
TNFP01375 LY6E-208ENST00000520531 490 ntTSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.15□□□□□ -0.14
TNFP01375 MIR4706-201ENST00000582134 82 ntBASIC14.15□□□□□ -0.14
TNFP01375 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.15□□□□□ -0.14
TNFP01375 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC14.15□□□□□ -0.14
TNFP01375 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.15□□□□□ -0.14
TNFP01375 SIGLEC18P-201ENST00000602271 909 ntBASIC14.15□□□□□ -0.14
TNFP01375 AC007326.1-201ENST00000604539 458 ntBASIC14.15□□□□□ -0.14
TNFP01375 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TNFP01375 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TNFP01375 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TNFP01375 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
TNFP01375 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TNFP01375 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.15□□□□□ -0.14
TNFP01375 AC144831.1-201ENST00000573312 2656 ntBASIC14.15□□□□□ -0.14
TNFP01375 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.15□□□□□ -0.14
TNFP01375 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
TNFP01375 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
TNFP01375 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
TNFP01375 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 MIR33B-201ENST00000385104 96 ntBASIC14.14□□□□□ -0.15
TNFP01375 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 AL807761.2-201ENST00000422849 729 ntBASIC14.14□□□□□ -0.15
TNFP01375 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.14□□□□□ -0.15
TNFP01375 RPS2P36-201ENST00000456516 831 ntBASIC14.14□□□□□ -0.15
TNFP01375 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC14.14□□□□□ -0.15
TNFP01375 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC14.14□□□□□ -0.15
TNFP01375 KRT8P1-201ENST00000557533 1207 ntBASIC14.14□□□□□ -0.15
TNFP01375 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.14□□□□□ -0.15
TNFP01375 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 AC023824.1-201ENST00000562945 2975 ntBASIC14.14□□□□□ -0.15
TNFP01375 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
TNFP01375 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 KRT8P31-201ENST00000504812 1408 ntBASIC14.14□□□□□ -0.15
TNFP01375 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
TNFP01375 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
TNFP01375 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.14□□□□□ -0.15
TNFP01375 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.14□□□□□ -0.15
TNFP01375 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms