Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 AC113398.1-201ENST00000464124 406 ntBASIC23.11■■□□□ 1.29
IFT140Q96RY7 AC104212.2-201ENST00000478813 628 ntBASIC23.11■■□□□ 1.29
IFT140Q96RY7 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 RN7SL202P-201ENST00000584410 262 ntBASIC23.11■■□□□ 1.29
IFT140Q96RY7 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 AC134878.2-201ENST00000620700 1265 ntBASIC23.11■■□□□ 1.29
IFT140Q96RY7 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 CELP-203ENST00000624767 2414 ntTSL 5 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 U3.41-201ENST00000408711 219 ntBASIC23.1■■□□□ 1.29
IFT140Q96RY7 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 RN7SL134P-201ENST00000579756 303 ntBASIC23.1■■□□□ 1.29
IFT140Q96RY7 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
IFT140Q96RY7 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC23.1■■□□□ 1.29
IFT140Q96RY7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 AC008622.3-201ENST00000621170 600 ntBASIC23.09■■□□□ 1.29
IFT140Q96RY7 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC23.09■■□□□ 1.29
IFT140Q96RY7 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
IFT140Q96RY7 AC097474.1-201ENST00000506481 1371 ntBASIC23.08■■□□□ 1.29
IFT140Q96RY7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
IFT140Q96RY7 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
IFT140Q96RY7 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
IFT140Q96RY7 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
IFT140Q96RY7 POLL-206ENST00000370172 2308 ntTSL 2 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
IFT140Q96RY7 HMGA1P1-201ENST00000415560 1062 ntBASIC23.08■■□□□ 1.29
IFT140Q96RY7 IQCF4-203ENST00000428561 420 ntBASIC23.08■■□□□ 1.29
IFT140Q96RY7 AC004910.1-201ENST00000433493 787 ntBASIC23.08■■□□□ 1.29
IFT140Q96RY7 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
IFT140Q96RY7 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
IFT140Q96RY7 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.29
IFT140Q96RY7 GUCY2EP-203ENST00000531117 1918 ntBASIC23.08■■□□□ 1.29
IFT140Q96RY7 LTB4R2-202ENST00000528054 3092 ntBASIC23.08■■□□□ 1.28
IFT140Q96RY7 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC23.08■■□□□ 1.28
IFT140Q96RY7 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC23.08■■□□□ 1.28
IFT140Q96RY7 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
IFT140Q96RY7 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 DDC-204ENST00000426377 1700 ntTSL 3 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AC092865.2-201ENST00000439409 971 ntBASIC23.07■■□□□ 1.28
IFT140Q96RY7 RBM14-205ENST00000443702 732 ntTSL 3 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AL161727.1-201ENST00000457409 530 ntBASIC23.07■■□□□ 1.28
IFT140Q96RY7 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AL450346.2-201ENST00000495602 1024 ntBASIC23.07■■□□□ 1.28
IFT140Q96RY7 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms