Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.29□□□□□ -0.12
CXCL12P48061 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 AC005740.1-201ENST00000515639 522 ntBASIC14.29□□□□□ -0.12
CXCL12P48061 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC14.29□□□□□ -0.12
CXCL12P48061 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC14.29□□□□□ -0.12
CXCL12P48061 KLF17P1-201ENST00000547105 1126 ntBASIC14.29□□□□□ -0.12
CXCL12P48061 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC14.29□□□□□ -0.12
CXCL12P48061 AC027139.1-201ENST00000565286 951 ntBASIC14.29□□□□□ -0.12
CXCL12P48061 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC14.29□□□□□ -0.12
CXCL12P48061 MIR5001-201ENST00000580185 100 ntBASIC14.29□□□□□ -0.12
CXCL12P48061 NAV1-210ENST00000593583 726 ntBASIC14.29□□□□□ -0.12
CXCL12P48061 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 ODCP-201ENST00000459650 1639 ntBASIC14.29□□□□□ -0.12
CXCL12P48061 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
CXCL12P48061 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CXCL12P48061 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CXCL12P48061 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
CXCL12P48061 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 AC019109.1-201ENST00000401725 1874 ntBASIC14.28□□□□□ -0.12
CXCL12P48061 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CXCL12P48061 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC14.28□□□□□ -0.12
CXCL12P48061 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 OR52M2P-201ENST00000414298 959 ntBASIC14.28□□□□□ -0.12
CXCL12P48061 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC14.28□□□□□ -0.12
CXCL12P48061 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CXCL12P48061 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC14.28□□□□□ -0.12
CXCL12P48061 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.28□□□□□ -0.12
CXCL12P48061 RN7SKP155-201ENST00000516031 288 ntBASIC14.28□□□□□ -0.12
CXCL12P48061 CASP3-205ENST00000517513 964 ntTSL 5 BASIC14.28□□□□□ -0.12
CXCL12P48061 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC14.28□□□□□ -0.12
CXCL12P48061 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CXCL12P48061 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.28□□□□□ -0.12
CXCL12P48061 AL627230.2-201ENST00000613254 655 ntBASIC14.28□□□□□ -0.12
CXCL12P48061 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
CXCL12P48061 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.28□□□□□ -0.12
CXCL12P48061 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CXCL12P48061 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CXCL12P48061 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CXCL12P48061 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
CXCL12P48061 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 AL162727.3-201ENST00000635661 2787 ntBASIC14.27□□□□□ -0.12
CXCL12P48061 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.12
CXCL12P48061 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL12P48061 PTGER4P2-201ENST00000328411 252 ntBASIC14.27□□□□□ -0.13
CXCL12P48061 NHP2P1-201ENST00000335274 462 ntBASIC14.27□□□□□ -0.13
CXCL12P48061 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CXCL12P48061 AF274858.1-201ENST00000406288 372 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms