Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
HTTP42858 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC15.75■□□□□ 0.11
HTTP42858 HNRNPABP1-201ENST00000406003 734 ntBASIC15.75■□□□□ 0.11
HTTP42858 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
HTTP42858 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HTTP42858 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.75■□□□□ 0.11
HTTP42858 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.75■□□□□ 0.11
HTTP42858 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
HTTP42858 RN7SKP212-201ENST00000410851 328 ntBASIC15.74■□□□□ 0.11
HTTP42858 AC008021.1-201ENST00000474180 414 ntBASIC15.74■□□□□ 0.11
HTTP42858 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 ABCD1P3-201ENST00000562927 605 ntBASIC15.74■□□□□ 0.11
HTTP42858 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC15.74■□□□□ 0.11
HTTP42858 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.74■□□□□ 0.11
HTTP42858 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.74■□□□□ 0.11
HTTP42858 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
HTTP42858 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HTTP42858 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HTTP42858 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 FTH1P18-201ENST00000412071 549 ntBASIC15.74■□□□□ 0.11
HTTP42858 OR4C14P-201ENST00000440929 923 ntBASIC15.74■□□□□ 0.11
HTTP42858 TBC1D3P6-201ENST00000505954 962 ntBASIC15.74■□□□□ 0.11
HTTP42858 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HTTP42858 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.74■□□□□ 0.11
HTTP42858 AC002350.2-201ENST00000623894 1828 ntBASIC15.74■□□□□ 0.11
HTTP42858 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 MIR339-201ENST00000362153 94 ntBASIC15.74■□□□□ 0.11
HTTP42858 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
HTTP42858 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC15.74■□□□□ 0.11
HTTP42858 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC15.74■□□□□ 0.11
HTTP42858 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC15.74■□□□□ 0.11
HTTP42858 MT3-202ENST00000561640 514 ntTSL 3 BASIC15.74■□□□□ 0.11
HTTP42858 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC15.74■□□□□ 0.11
HTTP42858 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HTTP42858 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
HTTP42858 WDR54-202ENST00000409791 854 ntTSL 3 BASIC15.73■□□□□ 0.11
HTTP42858 AL450346.2-201ENST00000495602 1024 ntBASIC15.73■□□□□ 0.11
HTTP42858 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC15.73■□□□□ 0.11
HTTP42858 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC15.73■□□□□ 0.11
HTTP42858 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
HTTP42858 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 RPL10-203ENST00000406022 748 ntTSL 3 BASIC15.73■□□□□ 0.11
HTTP42858 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.73■□□□□ 0.11
HTTP42858 AC106785.2-201ENST00000564385 1319 ntBASIC15.73■□□□□ 0.11
HTTP42858 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC15.73■□□□□ 0.11
HTTP42858 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 AC011498.7-201ENST00000624986 2027 ntBASIC15.73■□□□□ 0.11
HTTP42858 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HTTP42858 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HTTP42858 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms