Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.3■□□□□ 0.2
CIITAP33076 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.3■□□□□ 0.2
CIITAP33076 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.3■□□□□ 0.2
CIITAP33076 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
CIITAP33076 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CIITAP33076 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 AC152010.1-201ENST00000415779 2006 ntBASIC16.3■□□□□ 0.2
CIITAP33076 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CIITAP33076 RNA5SP359-201ENST00000364838 113 ntBASIC16.3■□□□□ 0.2
CIITAP33076 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.3■□□□□ 0.2
CIITAP33076 AC012618.1-201ENST00000461223 412 ntBASIC16.3■□□□□ 0.2
CIITAP33076 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.3■□□□□ 0.2
CIITAP33076 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.3■□□□□ 0.2
CIITAP33076 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CIITAP33076 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CIITAP33076 CHMP4BP1-201ENST00000556017 588 ntBASIC16.3■□□□□ 0.2
CIITAP33076 AC093752.3-201ENST00000567343 901 ntBASIC16.3■□□□□ 0.2
CIITAP33076 AF254983.2-201ENST00000612331 135 ntBASIC16.3■□□□□ 0.2
CIITAP33076 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CIITAP33076 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CIITAP33076 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.3■□□□□ 0.2
CIITAP33076 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CIITAP33076 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.3■□□□□ 0.2
CIITAP33076 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.3■□□□□ 0.2
CIITAP33076 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CIITAP33076 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CIITAP33076 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.29■□□□□ 0.2
CIITAP33076 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 AL662890.1-201ENST00000396818 632 ntBASIC16.29■□□□□ 0.2
CIITAP33076 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CIITAP33076 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.29■□□□□ 0.2
CIITAP33076 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC16.29■□□□□ 0.2
CIITAP33076 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.29■□□□□ 0.2
CIITAP33076 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.29■□□□□ 0.2
CIITAP33076 Z97180.1-201ENST00000445173 988 ntBASIC16.29■□□□□ 0.2
CIITAP33076 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.29■□□□□ 0.2
CIITAP33076 AC073150.1-201ENST00000450406 1084 ntBASIC16.29■□□□□ 0.2
CIITAP33076 IGHJ2P-201ENST00000454480 60 ntBASIC16.29■□□□□ 0.2
CIITAP33076 POU5F1P2-201ENST00000521750 823 ntBASIC16.29■□□□□ 0.2
CIITAP33076 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC16.29■□□□□ 0.2
CIITAP33076 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.29■□□□□ 0.2
CIITAP33076 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.29■□□□□ 0.2
CIITAP33076 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.29■□□□□ 0.2
CIITAP33076 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.29■□□□□ 0.2
CIITAP33076 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.29■□□□□ 0.2
CIITAP33076 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.29■□□□□ 0.2
CIITAP33076 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.29■□□□□ 0.2
CIITAP33076 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.29■□□□□ 0.2
CIITAP33076 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.29■□□□□ 0.2
CIITAP33076 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CIITAP33076 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.28■□□□□ 0.2
CIITAP33076 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CIITAP33076 AC023908.3-201ENST00000564211 3047 ntBASIC16.28■□□□□ 0.2
CIITAP33076 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.28■□□□□ 0.2
CIITAP33076 FRMPD2B-201ENST00000431305 1347 ntBASIC16.28■□□□□ 0.2
CIITAP33076 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CIITAP33076 SLC25A24P2-201ENST00000415059 510 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms