Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
PDGFBP01127 GGTLC4P-201ENST00000402176 664 ntBASIC14.39□□□□□ -0.11
PDGFBP01127 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.39□□□□□ -0.11
PDGFBP01127 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC14.39□□□□□ -0.11
PDGFBP01127 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.39□□□□□ -0.11
PDGFBP01127 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC14.39□□□□□ -0.11
PDGFBP01127 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.39□□□□□ -0.11
PDGFBP01127 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.39□□□□□ -0.11
PDGFBP01127 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PDGFBP01127 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
PDGFBP01127 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
PDGFBP01127 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC14.39□□□□□ -0.11
PDGFBP01127 PDXDC2P-206ENST00000534700 1315 ntBASIC14.39□□□□□ -0.11
PDGFBP01127 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDGFBP01127 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.38□□□□□ -0.11
PDGFBP01127 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.38□□□□□ -0.11
PDGFBP01127 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
PDGFBP01127 AC092573.1-201ENST00000433054 884 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 PEBP1P3-201ENST00000455475 548 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 AC025186.1-201ENST00000478174 870 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC14.38□□□□□ -0.11
PDGFBP01127 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 AP000920.1-201ENST00000531824 344 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 AC142086.5-202ENST00000562500 217 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC14.38□□□□□ -0.11
PDGFBP01127 AC079414.2-201ENST00000567157 1104 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 INO80E-209ENST00000567254 625 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 MIR4265-201ENST00000582152 99 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 RN7SL556P-201ENST00000582856 298 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
PDGFBP01127 URAHP-205ENST00000610227 398 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC14.38□□□□□ -0.11
PDGFBP01127 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 AC020904.3-201ENST00000624199 442 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.38□□□□□ -0.11
PDGFBP01127 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.38□□□□□ -0.11
PDGFBP01127 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDGFBP01127 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.38□□□□□ -0.11
PDGFBP01127 AC063926.3-201ENST00000624734 5658 ntBASIC14.38□□□□□ -0.11
PDGFBP01127 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms