Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.48□□□□□ -0.41
SDCBPO00560 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 AL365181.3-201ENST00000605886 3222 ntBASIC12.48□□□□□ -0.41
SDCBPO00560 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 BRF1-202ENST00000379932 884 ntTSL 5 BASIC12.48□□□□□ -0.41
SDCBPO00560 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
SDCBPO00560 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC12.48□□□□□ -0.41
SDCBPO00560 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.48□□□□□ -0.41
SDCBPO00560 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.48□□□□□ -0.41
SDCBPO00560 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.48□□□□□ -0.41
SDCBPO00560 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC12.48□□□□□ -0.41
SDCBPO00560 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC12.48□□□□□ -0.41
SDCBPO00560 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
SDCBPO00560 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.48□□□□□ -0.41
SDCBPO00560 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC12.48□□□□□ -0.41
SDCBPO00560 AL096865.1-201ENST00000606796 927 ntBASIC12.48□□□□□ -0.41
SDCBPO00560 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
SDCBPO00560 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
SDCBPO00560 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
SDCBPO00560 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
SDCBPO00560 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
SDCBPO00560 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC12.48□□□□□ -0.41
SDCBPO00560 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
SDCBPO00560 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 LRRC59-203ENST00000576448 1531 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 HSPA8P5-201ENST00000456928 2069 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 RNU1-114P-201ENST00000365297 166 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.47□□□□□ -0.41
SDCBPO00560 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 BCRP1-201ENST00000444246 691 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 AC114812.1-204ENST00000449669 728 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
SDCBPO00560 AC022616.1-201ENST00000518688 554 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.47□□□□□ -0.41
SDCBPO00560 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.47□□□□□ -0.41
SDCBPO00560 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.47□□□□□ -0.41
SDCBPO00560 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SDCBPO00560 CHCHD2P3-201ENST00000603038 451 ntBASIC12.47□□□□□ -0.41
SDCBPO00560 TMEM261P1-201ENST00000604899 340 ntBASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms