Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 RN7SL277P-201ENST00000481521 288 ntBASIC14.59□□□□□ -0.07
HMGB4Q8WW32 RN7SL81P-201ENST00000493781 261 ntBASIC14.59□□□□□ -0.07
HMGB4Q8WW32 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 POLD4-208ENST00000532830 904 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 MIR3180-2-201ENST00000581748 88 ntBASIC14.59□□□□□ -0.07
HMGB4Q8WW32 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 AL161773.1-201ENST00000624845 863 ntBASIC14.59□□□□□ -0.07
HMGB4Q8WW32 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HMGB4Q8WW32 AC015688.4-201ENST00000580780 1647 ntBASIC14.59□□□□□ -0.07
HMGB4Q8WW32 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB4Q8WW32 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 HLA-DQB1-202ENST00000399079 1501 ntBASIC14.58□□□□□ -0.08
HMGB4Q8WW32 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 RPL13AP19-201ENST00000434320 584 ntBASIC14.58□□□□□ -0.08
HMGB4Q8WW32 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 MRPL22P1-201ENST00000505398 616 ntBASIC14.58□□□□□ -0.08
HMGB4Q8WW32 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 MIR6858-201ENST00000620733 67 ntBASIC14.58□□□□□ -0.08
HMGB4Q8WW32 AC005618.3-201ENST00000624928 458 ntBASIC14.58□□□□□ -0.08
HMGB4Q8WW32 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB4Q8WW32 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB4Q8WW32 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB4Q8WW32 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms