Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TCAM1P-207ENST00000485295 1537 ntBASIC14.81□□□□□ -0.04
SHROOM3Q8TF72 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHROOM3Q8TF72 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHROOM3Q8TF72 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 MIR33B-201ENST00000385104 96 ntBASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AL023803.2-201ENST00000620080 638 ntBASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 AC144522.1-201ENST00000625111 1658 ntBASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHROOM3Q8TF72 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AC092978.1-202ENST00000637590 1327 ntBASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AL355334.1-201ENST00000417713 215 ntBASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AC009779.1-201ENST00000551138 283 ntBASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AC005586.2-201ENST00000563946 837 ntBASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHROOM3Q8TF72 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms