Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AC011247.3-201ENST00000603297 438 ntBASIC14.09□□□□□ -0.15
COL28A1Q2UY09 MME-218ENST00000625667 363 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
COL28A1Q2UY09 FAM90A2P-201ENST00000511144 1395 ntBASIC14.09□□□□□ -0.15
COL28A1Q2UY09 FAM90A25P-201ENST00000528404 1395 ntBASIC14.09□□□□□ -0.15
COL28A1Q2UY09 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL28A1Q2UY09 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AL139094.1-201ENST00000405549 1188 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 PSMD4P1-201ENST00000433951 1109 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 RPL18AP3-201ENST00000462885 528 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AC024293.1-201ENST00000467930 498 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AC026410.1-201ENST00000507366 1101 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 MIR5196-201ENST00000578146 115 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AL132994.2-201ENST00000603120 687 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AC005632.3-201ENST00000605544 308 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AL645728.2-202ENST00000641679 227 ntBASIC14.08□□□□□ -0.16
COL28A1Q2UY09 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
COL28A1Q2UY09 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 NHP2-202ENST00000314397 599 ntTSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 ACTBP7-201ENST00000418351 1124 ntBASIC14.07□□□□□ -0.16
COL28A1Q2UY09 RN7SL258P-201ENST00000478664 300 ntBASIC14.07□□□□□ -0.16
COL28A1Q2UY09 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms