Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC13.82□□□□□ -0.2
RFX3P48380 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 AC234783.1-201ENST00000441761 496 ntBASIC13.82□□□□□ -0.2
RFX3P48380 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.82□□□□□ -0.2
RFX3P48380 RN7SL48P-201ENST00000579283 293 ntBASIC13.82□□□□□ -0.2
RFX3P48380 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
RFX3P48380 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.82□□□□□ -0.2
RFX3P48380 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RFX3P48380 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RFX3P48380 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFX3P48380 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
RFX3P48380 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RFX3P48380 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RFX3P48380 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RFX3P48380 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
RFX3P48380 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
RFX3P48380 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.81□□□□□ -0.2
RFX3P48380 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.81□□□□□ -0.2
RFX3P48380 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.81□□□□□ -0.2
RFX3P48380 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 POM121L8P-201ENST00000417732 1281 ntBASIC13.81□□□□□ -0.2
RFX3P48380 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.81□□□□□ -0.2
RFX3P48380 POM121L9P-203ENST00000441984 1285 ntBASIC13.81□□□□□ -0.2
RFX3P48380 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RFX3P48380 RNA5SP486-201ENST00000515961 83 ntBASIC13.81□□□□□ -0.2
RFX3P48380 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.81□□□□□ -0.2
RFX3P48380 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 OR10B1P-201ENST00000601666 907 ntBASIC13.81□□□□□ -0.2
RFX3P48380 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.81□□□□□ -0.2
RFX3P48380 AC138466.3-201ENST00000619983 221 ntBASIC13.81□□□□□ -0.2
RFX3P48380 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.81□□□□□ -0.2
RFX3P48380 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RFX3P48380 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.81□□□□□ -0.2
RFX3P48380 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
RFX3P48380 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms