Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 NUP210P1-202ENST00000504322 710 ntBASIC15.35■□□□□ 0.05
BDNFP23560 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.35■□□□□ 0.05
BDNFP23560 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 AL161670.2-201ENST00000557650 1227 ntBASIC15.35■□□□□ 0.05
BDNFP23560 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
BDNFP23560 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.35■□□□□ 0.05
BDNFP23560 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 RN7SL574P-201ENST00000581512 297 ntBASIC15.35■□□□□ 0.05
BDNFP23560 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.35■□□□□ 0.05
BDNFP23560 AC091812.3-201ENST00000621362 345 ntBASIC15.35■□□□□ 0.05
BDNFP23560 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
BDNFP23560 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.35■□□□□ 0.05
BDNFP23560 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
BDNFP23560 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 AL390755.1-201ENST00000623716 2027 ntBASIC15.34■□□□□ 0.05
BDNFP23560 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 AC097359.2-201ENST00000604992 2389 ntBASIC15.34■□□□□ 0.05
BDNFP23560 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
BDNFP23560 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.34■□□□□ 0.05
BDNFP23560 AC239868.1-201ENST00000369385 493 ntBASIC15.34■□□□□ 0.05
BDNFP23560 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.34■□□□□ 0.05
BDNFP23560 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC15.34■□□□□ 0.05
BDNFP23560 TPT1P11-201ENST00000458482 498 ntBASIC15.34■□□□□ 0.05
BDNFP23560 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC15.34■□□□□ 0.05
BDNFP23560 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
BDNFP23560 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 AC068587.10-201ENST00000641210 219 ntBASIC15.34■□□□□ 0.05
BDNFP23560 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
BDNFP23560 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
BDNFP23560 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
BDNFP23560 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.33■□□□□ 0.05
BDNFP23560 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.33■□□□□ 0.05
BDNFP23560 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
BDNFP23560 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
BDNFP23560 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
BDNFP23560 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
BDNFP23560 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
BDNFP23560 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
BDNFP23560 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms