Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.94□□□□□ -0.02
HMGA1P17096 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGA1P17096 RPL18AP3-201ENST00000462885 528 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 TMCO5B-205ENST00000530020 894 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.94□□□□□ -0.02
HMGA1P17096 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC14.94□□□□□ -0.02
HMGA1P17096 NDUFB10P1-201ENST00000567319 521 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 AL133467.4-201ENST00000602953 725 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 AC087392.5-201ENST00000612517 489 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 MIR6727-201ENST00000620702 65 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 AC009145.4-201ENST00000625119 1294 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGA1P17096 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 AC140479.7-201ENST00000636301 2332 ntBASIC14.94□□□□□ -0.02
HMGA1P17096 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGA1P17096 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGA1P17096 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HMGA1P17096 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
HMGA1P17096 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGA1P17096 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.93□□□□□ -0.02
HMGA1P17096 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 AC068587.6-202ENST00000641839 5619 ntBASIC14.93□□□□□ -0.02
HMGA1P17096 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.93□□□□□ -0.02
HMGA1P17096 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.93□□□□□ -0.02
HMGA1P17096 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC14.93□□□□□ -0.02
HMGA1P17096 AL512306.1-201ENST00000432698 848 ntBASIC14.93□□□□□ -0.02
HMGA1P17096 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC14.93□□□□□ -0.02
HMGA1P17096 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.93□□□□□ -0.02
HMGA1P17096 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC14.93□□□□□ -0.02
HMGA1P17096 RN7SL665P-201ENST00000578793 300 ntBASIC14.93□□□□□ -0.02
HMGA1P17096 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 AC005618.3-201ENST00000624928 458 ntBASIC14.93□□□□□ -0.02
HMGA1P17096 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 AL390755.1-201ENST00000623716 2027 ntBASIC14.93□□□□□ -0.02
HMGA1P17096 AC007952.5-201ENST00000572818 1486 ntBASIC14.93□□□□□ -0.02
HMGA1P17096 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.93□□□□□ -0.02
HMGA1P17096 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.93□□□□□ -0.02
HMGA1P17096 AL591122.2-201ENST00000624125 1853 ntBASIC14.93□□□□□ -0.02
HMGA1P17096 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGA1P17096 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.92□□□□□ -0.02
HMGA1P17096 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.92□□□□□ -0.02
HMGA1P17096 RN7SL8P-201ENST00000461771 266 ntBASIC14.92□□□□□ -0.02
HMGA1P17096 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC14.92□□□□□ -0.02
HMGA1P17096 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 MIR4649-201ENST00000582839 64 ntBASIC14.92□□□□□ -0.02
HMGA1P17096 AL021707.6-201ENST00000609212 491 ntBASIC14.92□□□□□ -0.02
HMGA1P17096 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms