Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC131206.1-201ENST00000538078 1211 ntBASIC13.17□□□□□ -0.3
SPTA1P02549 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
SPTA1P02549 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC13.17□□□□□ -0.3
SPTA1P02549 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
SPTA1P02549 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.16□□□□□ -0.3
SPTA1P02549 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 FAU-201ENST00000279259 461 ntTSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SPTA1P02549 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
SPTA1P02549 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC13.16□□□□□ -0.3
SPTA1P02549 VENTXP4-201ENST00000449029 958 ntBASIC13.16□□□□□ -0.3
SPTA1P02549 AL451000.1-201ENST00000451300 1186 ntBASIC13.16□□□□□ -0.3
SPTA1P02549 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC13.16□□□□□ -0.3
SPTA1P02549 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC13.16□□□□□ -0.3
SPTA1P02549 MIR5001-201ENST00000580185 100 ntBASIC13.16□□□□□ -0.3
SPTA1P02549 AP000769.1-203ENST00000637245 208 ntBASIC13.16□□□□□ -0.3
SPTA1P02549 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
SPTA1P02549 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.16□□□□□ -0.3
SPTA1P02549 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SPTA1P02549 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 DKKL1P1-201ENST00000400550 698 ntBASIC13.15□□□□□ -0.3
SPTA1P02549 KRT8P30-201ENST00000432100 650 ntBASIC13.15□□□□□ -0.3
SPTA1P02549 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.15□□□□□ -0.3
SPTA1P02549 AC006529.1-201ENST00000459978 637 ntBASIC13.15□□□□□ -0.3
SPTA1P02549 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC13.15□□□□□ -0.3
SPTA1P02549 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 OR8T1P-201ENST00000421347 918 ntBASIC13.15□□□□□ -0.3
SPTA1P02549 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 AC013553.1-201ENST00000560906 267 ntBASIC13.15□□□□□ -0.3
SPTA1P02549 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC13.15□□□□□ -0.3
SPTA1P02549 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC13.15□□□□□ -0.3
SPTA1P02549 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC13.15□□□□□ -0.3
SPTA1P02549 AC006483.2-201ENST00000609813 515 ntBASIC13.15□□□□□ -0.3
SPTA1P02549 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC13.15□□□□□ -0.3
SPTA1P02549 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SPTA1P02549 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms