Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
SDCBPO00560 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC12.5□□□□□ -0.41
SDCBPO00560 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC12.5□□□□□ -0.41
SDCBPO00560 FAM207CP-201ENST00000443486 507 ntBASIC12.5□□□□□ -0.41
SDCBPO00560 MYCLP2-201ENST00000449268 967 ntBASIC12.5□□□□□ -0.41
SDCBPO00560 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.5□□□□□ -0.41
SDCBPO00560 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC12.5□□□□□ -0.41
SDCBPO00560 AL359711.2-201ENST00000563105 872 ntBASIC12.5□□□□□ -0.41
SDCBPO00560 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.5□□□□□ -0.41
SDCBPO00560 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
SDCBPO00560 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.5□□□□□ -0.41
SDCBPO00560 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC12.5□□□□□ -0.41
SDCBPO00560 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 MYADML-201ENST00000474610 2147 ntBASIC12.5□□□□□ -0.41
SDCBPO00560 AL359183.1-201ENST00000623796 2132 ntBASIC12.5□□□□□ -0.41
SDCBPO00560 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 WARS-203ENST00000358655 2466 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 AC011498.7-201ENST00000624986 2027 ntBASIC12.49□□□□□ -0.41
SDCBPO00560 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 AL139094.1-201ENST00000405549 1188 ntBASIC12.49□□□□□ -0.41
SDCBPO00560 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC12.49□□□□□ -0.41
SDCBPO00560 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.49□□□□□ -0.41
SDCBPO00560 AC124283.3-201ENST00000570869 594 ntBASIC12.49□□□□□ -0.41
SDCBPO00560 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.49□□□□□ -0.41
SDCBPO00560 LINC02560-201ENST00000596379 459 ntBASIC12.49□□□□□ -0.41
SDCBPO00560 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 AC019294.4-201ENST00000561777 2905 ntBASIC12.49□□□□□ -0.41
SDCBPO00560 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.49□□□□□ -0.41
SDCBPO00560 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
SDCBPO00560 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
SDCBPO00560 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SDCBPO00560 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms