Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC215219.1-201ENST00000400706 1817 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AL136309.1-201ENST00000403917 691 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 COX5BP8-201ENST00000416911 349 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 NME2P1-201ENST00000426182 414 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 MTCYBP15-201ENST00000433123 1127 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 EAF2-202ENST00000451944 960 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC007551.1-201ENST00000457394 519 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 FTH1P14-201ENST00000482930 551 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC114322.1-201ENST00000506771 926 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AP005018.1-201ENST00000525475 301 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 KRT90P-201ENST00000549264 1064 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 CR383656.12-201ENST00000549567 513 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC132938.2-201ENST00000579188 680 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AP001793.2-201ENST00000580267 780 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC002472.3-201ENST00000640124 621 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AL591163.1-201ENST00000641757 987 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC126335.2-201ENST00000623362 4637 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 AC027601.5-201ENST00000624065 2482 ntBASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS9D1Q9Y2B5 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 AC009093.10-201ENST00000641956 1442 ntBASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 ARSEP1-201ENST00000420443 635 ntBASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.66□□□□□ -0.06
VPS9D1Q9Y2B5 FAM197Y7-201ENST00000432892 766 ntBASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms