Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 WASH4P-201ENST00000564273 1246 ntBASIC17■□□□□ 0.31
CCDC39Q9UFE4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 AC009486.1-201ENST00000569860 813 ntBASIC17■□□□□ 0.31
CCDC39Q9UFE4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 CLUHP6-201ENST00000580789 941 ntBASIC17■□□□□ 0.31
CCDC39Q9UFE4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC39Q9UFE4 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC39Q9UFE4 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC39Q9UFE4 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC39Q9UFE4 AL354702.1-201ENST00000442006 1960 ntBASIC17■□□□□ 0.31
CCDC39Q9UFE4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC39Q9UFE4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC39Q9UFE4 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC17■□□□□ 0.31
CCDC39Q9UFE4 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 AC068760.1-201ENST00000493579 1953 ntBASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 ACTBP8-201ENST00000403258 1108 ntBASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC39Q9UFE4 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 FAM90A12P-201ENST00000519497 2375 ntBASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 FAM90A24P-201ENST00000520792 2369 ntBASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 AC093433.1-201ENST00000458048 571 ntBASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC39Q9UFE4 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms