Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 PGAM1P5-201ENST00000548011 764 ntBASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 AC008805.1-201ENST00000590892 364 ntBASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 AC018629.1-201ENST00000623381 1736 ntBASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC16.14■□□□□ 0.17
BLOC1S4Q9NUP1 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 DPM3-202ENST00000368399 517 ntBASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 XBP1P1-201ENST00000436573 652 ntBASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 AC104073.2-201ENST00000453737 312 ntBASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 FAM8A2P-201ENST00000528813 1142 ntBASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 AC021016.3-201ENST00000608367 477 ntBASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 AC090386.2-201ENST00000623010 1039 ntBASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BLOC1S4Q9NUP1 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BLOC1S4Q9NUP1 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms