Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 Z97180.1-201ENST00000445173 988 ntBASIC16.62■□□□□ 0.25
SMARCA1P28370 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.62■□□□□ 0.25
SMARCA1P28370 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 RN7SL258P-201ENST00000478664 300 ntBASIC16.62■□□□□ 0.25
SMARCA1P28370 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.62■□□□□ 0.25
SMARCA1P28370 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SMARCA1P28370 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.62■□□□□ 0.25
SMARCA1P28370 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 FRMPD2B-201ENST00000431305 1347 ntBASIC16.62■□□□□ 0.25
SMARCA1P28370 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.62■□□□□ 0.25
SMARCA1P28370 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.62■□□□□ 0.25
SMARCA1P28370 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 LINC01815-202ENST00000641468 1409 ntBASIC16.62■□□□□ 0.25
SMARCA1P28370 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.61■□□□□ 0.25
SMARCA1P28370 RPL13AP3-202ENST00000494676 1473 ntBASIC16.61■□□□□ 0.25
SMARCA1P28370 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.61■□□□□ 0.25
SMARCA1P28370 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCA1P28370 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 RNA5SP359-201ENST00000364838 113 ntBASIC16.61■□□□□ 0.25
SMARCA1P28370 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCA1P28370 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.61■□□□□ 0.25
SMARCA1P28370 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 RN7SL11P-201ENST00000471305 293 ntBASIC16.61■□□□□ 0.25
SMARCA1P28370 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCA1P28370 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.61■□□□□ 0.25
SMARCA1P28370 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SMARCA1P28370 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.61■□□□□ 0.25
SMARCA1P28370 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
SMARCA1P28370 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCA1P28370 MEG3_2.1-201ENST00000611456 105 ntBASIC16.61■□□□□ 0.25
SMARCA1P28370 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SMARCA1P28370 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SMARCA1P28370 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SMARCA1P28370 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.61■□□□□ 0.25
SMARCA1P28370 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SMARCA1P28370 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC16.61■□□□□ 0.25
SMARCA1P28370 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMARCA1P28370 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.6■□□□□ 0.25
SMARCA1P28370 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 AC016397.2-201ENST00000624848 1985 ntBASIC16.6■□□□□ 0.25
SMARCA1P28370 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SMARCA1P28370 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.6■□□□□ 0.25
SMARCA1P28370 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.6■□□□□ 0.25
SMARCA1P28370 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SMARCA1P28370 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.6■□□□□ 0.25
SMARCA1P28370 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.6■□□□□ 0.25
SMARCA1P28370 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMARCA1P28370 AL662890.1-201ENST00000396818 632 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms