Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC3P19447 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ERCC3P19447 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 AC144522.1-201ENST00000625111 1658 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.94■□□□□ 0.3
ERCC3P19447 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ERCC3P19447 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.94■□□□□ 0.3
ERCC3P19447 AC026316.1-201ENST00000398900 414 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC3P19447 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC3P19447 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC3P19447 AL645933.1-201ENST00000440087 609 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 AC006122.1-201ENST00000493323 440 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC3P19447 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
ERCC3P19447 AC131206.1-201ENST00000538078 1211 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.94■□□□□ 0.3
ERCC3P19447 RN7SL555P-201ENST00000584742 339 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 AL157813.1-201ENST00000612996 587 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.94■□□□□ 0.3
ERCC3P19447 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
ERCC3P19447 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 ZBED1P1-201ENST00000502364 1930 ntBASIC16.94■□□□□ 0.3
ERCC3P19447 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.94■□□□□ 0.3
ERCC3P19447 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.94■□□□□ 0.3
ERCC3P19447 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ERCC3P19447 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ERCC3P19447 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 AC013726.1-201ENST00000563747 2285 ntBASIC16.93■□□□□ 0.3
ERCC3P19447 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
ERCC3P19447 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
ERCC3P19447 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.93■□□□□ 0.3
ERCC3P19447 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.93■□□□□ 0.3
ERCC3P19447 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
ERCC3P19447 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.93■□□□□ 0.3
ERCC3P19447 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.93■□□□□ 0.3
ERCC3P19447 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 CICP14-201ENST00000629111 2732 ntBASIC16.93■□□□□ 0.3
ERCC3P19447 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 AC007292.2-201ENST00000593524 1812 ntBASIC16.93■□□□□ 0.3
ERCC3P19447 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 MROH4P-201ENST00000431302 1578 ntBASIC16.93■□□□□ 0.3
ERCC3P19447 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms