Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 AGGF1P1-201ENST00000509500 2073 ntBASIC17.11■□□□□ 0.33
HLA-DOAP06340 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 AC092580.1-201ENST00000433998 658 ntBASIC17.11■□□□□ 0.33
HLA-DOAP06340 AC098935.1-201ENST00000446057 611 ntBASIC17.11■□□□□ 0.33
HLA-DOAP06340 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 SIGLEC18P-201ENST00000602271 909 ntBASIC17.11■□□□□ 0.33
HLA-DOAP06340 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 FGD5P1-202ENST00000614866 2498 ntBASIC17.11■□□□□ 0.33
HLA-DOAP06340 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
HLA-DOAP06340 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DOAP06340 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 KRT17P5-201ENST00000332088 839 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 RN7SL181P-201ENST00000462921 277 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 AC008267.1-201ENST00000474858 1069 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 KRT8P1-201ENST00000557533 1207 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 MIR3147-201ENST00000577811 66 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 AC005632.3-201ENST00000605544 308 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 AC073352.2-201ENST00000609385 439 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 MARK2P16-201ENST00000605714 1723 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 AC097376.2-205ENST00000610159 5334 ntBASIC17.1■□□□□ 0.33
HLA-DOAP06340 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DOAP06340 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DOAP06340 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms