Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 KRT43P-201ENST00000434019 910 ntBASIC14.16□□□□□ -0.14
CLDN9O95484 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CLDN9O95484 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 KRT90P-201ENST00000549264 1064 ntBASIC14.16□□□□□ -0.14
CLDN9O95484 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.16□□□□□ -0.14
CLDN9O95484 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 AC073413.1-201ENST00000603927 732 ntBASIC14.16□□□□□ -0.14
CLDN9O95484 IGHV3-72-202ENST00000621503 303 ntBASIC14.16□□□□□ -0.14
CLDN9O95484 AC027601.3-201ENST00000622907 509 ntBASIC14.16□□□□□ -0.14
CLDN9O95484 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CLDN9O95484 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 AC064801.2-201ENST00000625052 1303 ntBASIC14.15□□□□□ -0.14
CLDN9O95484 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CLDN9O95484 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.15□□□□□ -0.14
CLDN9O95484 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 CICP12-201ENST00000455801 843 ntBASIC14.15□□□□□ -0.14
CLDN9O95484 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.15□□□□□ -0.14
CLDN9O95484 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.15□□□□□ -0.14
CLDN9O95484 AC005586.2-201ENST00000563946 837 ntBASIC14.15□□□□□ -0.14
CLDN9O95484 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.15□□□□□ -0.14
CLDN9O95484 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.15□□□□□ -0.14
CLDN9O95484 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.15□□□□□ -0.14
CLDN9O95484 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.15□□□□□ -0.14
CLDN9O95484 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.15□□□□□ -0.14
CLDN9O95484 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.15□□□□□ -0.14
CLDN9O95484 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CLDN9O95484 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLDN9O95484 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
CLDN9O95484 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.15□□□□□ -0.15
CLDN9O95484 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.14□□□□□ -0.15
CLDN9O95484 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms