Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
NPHP1O15259 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.42■□□□□ 0.54
NPHP1O15259 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 AC007292.2-201ENST00000593524 1812 ntBASIC18.42■□□□□ 0.54
NPHP1O15259 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
NPHP1O15259 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
NPHP1O15259 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NPHP1O15259 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
NPHP1O15259 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
NPHP1O15259 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
NPHP1O15259 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
NPHP1O15259 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.41■□□□□ 0.54
NPHP1O15259 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.41■□□□□ 0.54
NPHP1O15259 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 RNA5SP359-201ENST00000364838 113 ntBASIC18.41■□□□□ 0.54
NPHP1O15259 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.41■□□□□ 0.54
NPHP1O15259 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.41■□□□□ 0.54
NPHP1O15259 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.41■□□□□ 0.54
NPHP1O15259 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.41■□□□□ 0.54
NPHP1O15259 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.41■□□□□ 0.54
NPHP1O15259 AC012362.1-201ENST00000434906 739 ntBASIC18.41■□□□□ 0.54
NPHP1O15259 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 AC018463.1-201ENST00000456674 917 ntBASIC18.41■□□□□ 0.54
NPHP1O15259 CTBP2P4-201ENST00000513884 920 ntBASIC18.41■□□□□ 0.54
NPHP1O15259 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
NPHP1O15259 MIR4522-201ENST00000584932 87 ntBASIC18.41■□□□□ 0.54
NPHP1O15259 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.41■□□□□ 0.54
NPHP1O15259 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
NPHP1O15259 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
NPHP1O15259 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
NPHP1O15259 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
NPHP1O15259 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
NPHP1O15259 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
NPHP1O15259 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.41■□□□□ 0.54
NPHP1O15259 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPHP1O15259 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
NPHP1O15259 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NPHP1O15259 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.4■□□□□ 0.54
NPHP1O15259 BANF1P3-201ENST00000412556 261 ntBASIC18.4■□□□□ 0.54
NPHP1O15259 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 RPSAP15-201ENST00000448168 861 ntBASIC18.4■□□□□ 0.54
NPHP1O15259 DUTP3-201ENST00000450025 415 ntBASIC18.4■□□□□ 0.54
NPHP1O15259 AC131206.1-201ENST00000538078 1211 ntBASIC18.4■□□□□ 0.54
NPHP1O15259 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.4■□□□□ 0.54
NPHP1O15259 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
NPHP1O15259 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.4■□□□□ 0.54
NPHP1O15259 DNM1P30-201ENST00000563586 452 ntBASIC18.4■□□□□ 0.54
NPHP1O15259 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.4■□□□□ 0.54
NPHP1O15259 MIR4649-201ENST00000582839 64 ntBASIC18.4■□□□□ 0.54
NPHP1O15259 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.4■□□□□ 0.54
NPHP1O15259 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.4■□□□□ 0.54
NPHP1O15259 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
NPHP1O15259 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NPHP1O15259 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.4■□□□□ 0.54
NPHP1O15259 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.4■□□□□ 0.54
NPHP1O15259 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NPHP1O15259 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
NPHP1O15259 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.4■□□□□ 0.54
NPHP1O15259 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPHP1O15259 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.4■□□□□ 0.54
NPHP1O15259 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NPHP1O15259 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
NPHP1O15259 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NPHP1O15259 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.39■□□□□ 0.54
NPHP1O15259 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NPHP1O15259 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms