Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 AMT-232ENST00000636199 1546 ntTSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
SDCBPO00560 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 TEX30-203ENST00000376022 828 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 TMEM198B-204ENST00000484016 896 ntBASIC12.51□□□□□ -0.41
SDCBPO00560 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 AC092552.1-201ENST00000547243 906 ntBASIC12.51□□□□□ -0.41
SDCBPO00560 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 SPDYE22P-201ENST00000582158 798 ntBASIC12.51□□□□□ -0.41
SDCBPO00560 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC12.51□□□□□ -0.41
SDCBPO00560 AC133539.2-201ENST00000604757 467 ntBASIC12.51□□□□□ -0.41
SDCBPO00560 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.51□□□□□ -0.41
SDCBPO00560 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC12.51□□□□□ -0.41
SDCBPO00560 AC008761.3-201ENST00000624803 892 ntBASIC12.51□□□□□ -0.41
SDCBPO00560 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
SDCBPO00560 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 AC023794.5-201ENST00000564380 2157 ntBASIC12.51□□□□□ -0.41
SDCBPO00560 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
SDCBPO00560 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 TCAM1P-207ENST00000485295 1537 ntBASIC12.51□□□□□ -0.41
SDCBPO00560 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
SDCBPO00560 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC12.51□□□□□ -0.41
SDCBPO00560 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC12.51□□□□□ -0.41
SDCBPO00560 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SDCBPO00560 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
SDCBPO00560 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 AC027612.1-201ENST00000445234 2395 ntBASIC12.5□□□□□ -0.41
SDCBPO00560 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.5□□□□□ -0.41
SDCBPO00560 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
SDCBPO00560 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
SDCBPO00560 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
SDCBPO00560 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms