Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CCDC188H7C350 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC188H7C350 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC188H7C350 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC188H7C350 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC188H7C350 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC188H7C350 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 AL022313.4-201ENST00000562756 2046 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.22■□□□□ 0.03
CCDC188H7C350 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC188H7C350 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC188H7C350 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.22■□□□□ 0.03
CCDC188H7C350 ARSEP1-201ENST00000420443 635 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC188H7C350 MESTP3-201ENST00000503460 968 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC188H7C350 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.22■□□□□ 0.03
CCDC188H7C350 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC188H7C350 AC099568.2-201ENST00000609194 695 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 AC104506.1-201ENST00000609247 429 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC188H7C350 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
CCDC188H7C350 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CCDC188H7C350 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC188H7C350 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CCDC188H7C350 AC005562.1-201ENST00000583030 3219 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC188H7C350 GOLGA8IP-202ENST00000611635 2100 ntBASIC15.22■□□□□ 0.03
CCDC188H7C350 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC188H7C350 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC188H7C350 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC188H7C350 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CCDC188H7C350 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CCDC188H7C350 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC188H7C350 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CCDC188H7C350 ACKR1-201ENST00000368121 1240 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 AL161932.2-201ENST00000435436 679 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC188H7C350 GNAQP1-201ENST00000444815 1067 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 PUDPP3-201ENST00000445368 636 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC188H7C350 KRT18P25-201ENST00000508931 1278 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC188H7C350 AC005586.2-201ENST00000563946 837 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.21■□□□□ 0.03
CCDC188H7C350 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CCDC188H7C350 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 AC008761.3-201ENST00000624803 892 ntBASIC15.21■□□□□ 0.03
CCDC188H7C350 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC188H7C350 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC188H7C350 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CCDC188H7C350 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC188H7C350 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC188H7C350 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC188H7C350 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.21■□□□□ 0.02
CCDC188H7C350 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
CCDC188H7C350 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
CCDC188H7C350 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC188H7C350 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
CCDC188H7C350 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CCDC188H7C350 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC188H7C350 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CCDC188H7C350 MARK2P9-201ENST00000430958 1727 ntBASIC15.2■□□□□ 0.02
CCDC188H7C350 C8orf49-201ENST00000525043 1968 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms