Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AL589739.1-201ENST00000607720 493 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AC007967.4-201ENST00000614700 386 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AL033527.5-202ENST00000641632 1098 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AC092053.3-201ENST00000641308 4975 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AGAP12P-201ENST00000585227 2359 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AP002761.4-201ENST00000565433 3361 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 HPD-204ENST00000543163 1709 ntTSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 TP73-207ENST00000378290 1831 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 YBX2P1-201ENST00000394192 760 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 MED15P5-201ENST00000423150 992 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 FAAHP1-202ENST00000446499 1238 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 KRT18P3-201ENST00000451602 1288 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 SERBP1P3-201ENST00000459980 809 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 GPX4-206ENST00000588919 803 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AC140113.2-201ENST00000604370 208 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AL035456.1-201ENST00000456064 1369 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AL805961.2-201ENST00000642139 4817 ntBASIC10.73□□□□□ -0.69
SMKR1H3BMG3 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
SMKR1H3BMG3 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC10.73□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms