Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 FUK-202ENST00000378912 3925 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
USP28Q96RU2 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
USP28Q96RU2 CNN2P8-201ENST00000421872 913 ntBASIC16.7■□□□□ 0.26
USP28Q96RU2 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 HMGN1P19-201ENST00000436976 333 ntBASIC16.7■□□□□ 0.26
USP28Q96RU2 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.7■□□□□ 0.26
USP28Q96RU2 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 COX5BP1-201ENST00000507622 393 ntBASIC16.7■□□□□ 0.26
USP28Q96RU2 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.7■□□□□ 0.26
USP28Q96RU2 RN7SL713P-201ENST00000582127 302 ntBASIC16.7■□□□□ 0.26
USP28Q96RU2 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 AC138951.2-201ENST00000623455 1161 ntBASIC16.7■□□□□ 0.26
USP28Q96RU2 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
USP28Q96RU2 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
USP28Q96RU2 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
USP28Q96RU2 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
USP28Q96RU2 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
USP28Q96RU2 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.69■□□□□ 0.26
USP28Q96RU2 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 AC072061.1-201ENST00000569710 2234 ntBASIC16.69■□□□□ 0.26
USP28Q96RU2 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.69■□□□□ 0.26
USP28Q96RU2 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
USP28Q96RU2 APP-205ENST00000358918 2366 ntTSL 5 BASIC16.69■□□□□ 0.26
USP28Q96RU2 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 CD8B2-202ENST00000417670 633 ntBASIC16.69■□□□□ 0.26
USP28Q96RU2 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.69■□□□□ 0.26
USP28Q96RU2 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.69■□□□□ 0.26
USP28Q96RU2 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.69■□□□□ 0.26
USP28Q96RU2 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.69■□□□□ 0.26
USP28Q96RU2 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.69■□□□□ 0.26
USP28Q96RU2 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 KRT90P-201ENST00000549264 1064 ntBASIC16.69■□□□□ 0.26
USP28Q96RU2 AC005586.2-201ENST00000563946 837 ntBASIC16.69■□□□□ 0.26
USP28Q96RU2 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.69■□□□□ 0.26
USP28Q96RU2 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
USP28Q96RU2 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 AC015818.8-201ENST00000587907 1519 ntBASIC16.69■□□□□ 0.26
USP28Q96RU2 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.69■□□□□ 0.26
USP28Q96RU2 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 LINC02486-201ENST00000604157 3000 ntBASIC16.69■□□□□ 0.26
USP28Q96RU2 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USP28Q96RU2 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms