Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 AC098657.1-201ENST00000416270 1135 ntBASIC15.74■□□□□ 0.11
LRCH3Q96II8 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 AC090820.1-201ENST00000519722 591 ntBASIC15.74■□□□□ 0.11
LRCH3Q96II8 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 URB1-AS1-201ENST00000534991 831 ntBASIC15.74■□□□□ 0.11
LRCH3Q96II8 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 AL160191.2-201ENST00000603975 601 ntBASIC15.74■□□□□ 0.11
LRCH3Q96II8 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 MIR6893-201ENST00000613458 69 ntBASIC15.74■□□□□ 0.11
LRCH3Q96II8 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.74■□□□□ 0.11
LRCH3Q96II8 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LRCH3Q96II8 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 GGTLC4P-201ENST00000402176 664 ntBASIC15.73■□□□□ 0.11
LRCH3Q96II8 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 APOC1-209ENST00000592885 562 ntTSL 3 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 AC027601.3-201ENST00000622907 509 ntBASIC15.73■□□□□ 0.11
LRCH3Q96II8 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 LINC02228-204ENST00000642115 2962 ntBASIC15.73■□□□□ 0.11
LRCH3Q96II8 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC15.73■□□□□ 0.11
LRCH3Q96II8 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LRCH3Q96II8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LRCH3Q96II8 LRRIQ3-202ENST00000370909 793 ntTSL 5 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 KRT18P36-201ENST00000411618 1276 ntBASIC15.72■□□□□ 0.11
LRCH3Q96II8 AC010422.1-201ENST00000414548 543 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 PSAT1P2-201ENST00000426107 972 ntBASIC15.72■□□□□ 0.11
LRCH3Q96II8 EEF1DP5-201ENST00000431410 772 ntBASIC15.72■□□□□ 0.11
LRCH3Q96II8 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC15.72■□□□□ 0.11
LRCH3Q96II8 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms