Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 AL138709.1-201ENST00000614840 1693 ntBASIC13.85□□□□□ -0.19
RFX3P48380 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.85□□□□□ -0.19
RFX3P48380 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 STRCP1-201ENST00000509801 5328 ntBASIC13.85□□□□□ -0.19
RFX3P48380 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
RFX3P48380 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
RFX3P48380 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.85□□□□□ -0.19
RFX3P48380 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.85□□□□□ -0.19
RFX3P48380 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.85□□□□□ -0.19
RFX3P48380 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 CLUHP2-201ENST00000426660 1303 ntBASIC13.85□□□□□ -0.19
RFX3P48380 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RFX3P48380 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.85□□□□□ -0.19
RFX3P48380 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
RFX3P48380 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RFX3P48380 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 AL136172.1-201ENST00000598590 1394 ntBASIC13.84□□□□□ -0.19
RFX3P48380 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 AP001267.2-201ENST00000532619 2086 ntBASIC13.84□□□□□ -0.19
RFX3P48380 AC006504.5-208ENST00000588784 2401 ntBASIC13.84□□□□□ -0.19
RFX3P48380 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 AL137784.3-201ENST00000623858 2288 ntBASIC13.84□□□□□ -0.19
RFX3P48380 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RFX3P48380 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.84□□□□□ -0.19
RFX3P48380 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.84□□□□□ -0.19
RFX3P48380 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
RFX3P48380 FAM197Y7-201ENST00000432892 766 ntBASIC13.84□□□□□ -0.19
RFX3P48380 AC016694.1-201ENST00000434179 700 ntBASIC13.84□□□□□ -0.19
RFX3P48380 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.84□□□□□ -0.19
RFX3P48380 CROCCP4-201ENST00000457096 498 ntBASIC13.84□□□□□ -0.19
RFX3P48380 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms