Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MIR6775-201ENST00000617557 69 ntBASIC14.26□□□□□ -0.13
HNF4AP41235 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.26□□□□□ -0.13
HNF4AP41235 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.25□□□□□ -0.13
HNF4AP41235 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 KHSRPP1-201ENST00000427983 1768 ntBASIC14.25□□□□□ -0.13
HNF4AP41235 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 ANKRD19P-201ENST00000338192 862 ntBASIC14.25□□□□□ -0.13
HNF4AP41235 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.25□□□□□ -0.13
HNF4AP41235 RPL7P3-201ENST00000441388 714 ntBASIC14.25□□□□□ -0.13
HNF4AP41235 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 AC104989.1-201ENST00000519711 778 ntBASIC14.25□□□□□ -0.13
HNF4AP41235 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.25□□□□□ -0.13
HNF4AP41235 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.25□□□□□ -0.13
HNF4AP41235 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.25□□□□□ -0.13
HNF4AP41235 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.25□□□□□ -0.13
HNF4AP41235 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HNF4AP41235 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HNF4AP41235 AC009093.2-202ENST00000620513 2079 ntBASIC14.25□□□□□ -0.13
HNF4AP41235 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 AL590440.2-201ENST00000641973 1595 ntBASIC14.25□□□□□ -0.13
HNF4AP41235 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HNF4AP41235 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HNF4AP41235 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
HNF4AP41235 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.24□□□□□ -0.13
HNF4AP41235 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 RN7SL832P-201ENST00000607781 1756 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HNF4AP41235 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.24□□□□□ -0.13
HNF4AP41235 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.24□□□□□ -0.13
HNF4AP41235 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 BOLA2P3-201ENST00000404566 256 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 AC004945.1-201ENST00000416738 983 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms