Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCD3P28288 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 TMBIM7P-202ENST00000641474 1516 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
ABCD3P28288 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.49□□□□□ -0.25
ABCD3P28288 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
ABCD3P28288 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
ABCD3P28288 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.49□□□□□ -0.25
ABCD3P28288 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.49□□□□□ -0.25
ABCD3P28288 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 AC005962.1-201ENST00000584100 773 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 AC005324.6-201ENST00000587972 613 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 BNIP3P13-201ENST00000599968 566 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.49□□□□□ -0.25
ABCD3P28288 MIR6074-201ENST00000612054 107 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 MIR6869-201ENST00000619434 62 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.49□□□□□ -0.25
ABCD3P28288 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 AC097376.2-205ENST00000610159 5334 ntBASIC13.49□□□□□ -0.25
ABCD3P28288 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.49□□□□□ -0.25
ABCD3P28288 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.49□□□□□ -0.25
ABCD3P28288 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.49□□□□□ -0.25
ABCD3P28288 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCD3P28288 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
ABCD3P28288 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
ABCD3P28288 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCD3P28288 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
ABCD3P28288 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCD3P28288 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
ABCD3P28288 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 AC004899.1-201ENST00000424687 1714 ntBASIC13.48□□□□□ -0.25
ABCD3P28288 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCD3P28288 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCD3P28288 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
ABCD3P28288 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
ABCD3P28288 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
ABCD3P28288 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.48□□□□□ -0.25
ABCD3P28288 AC126915.1-201ENST00000522847 1038 ntBASIC13.48□□□□□ -0.25
ABCD3P28288 RBM8B-201ENST00000555532 525 ntBASIC13.48□□□□□ -0.25
ABCD3P28288 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.48□□□□□ -0.25
ABCD3P28288 SORD2P-201ENST00000558556 1069 ntBASIC13.48□□□□□ -0.25
ABCD3P28288 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCD3P28288 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCD3P28288 AL022328.3-201ENST00000607943 679 ntBASIC13.48□□□□□ -0.25
ABCD3P28288 MIR6799-201ENST00000620297 69 ntBASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms