Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC12.77□□□□□ -0.37
COL8A1P27658 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.77□□□□□ -0.37
COL8A1P27658 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 AC018629.1-201ENST00000623381 1736 ntBASIC12.76□□□□□ -0.37
COL8A1P27658 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 NHP2P1-201ENST00000335274 462 ntBASIC12.76□□□□□ -0.37
COL8A1P27658 CTSL-202ENST00000342020 933 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
COL8A1P27658 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
COL8A1P27658 NME4-203ENST00000397722 1232 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC12.76□□□□□ -0.37
COL8A1P27658 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC12.76□□□□□ -0.37
COL8A1P27658 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 PPIA-208ENST00000489459 907 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC12.76□□□□□ -0.37
COL8A1P27658 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC12.76□□□□□ -0.37
COL8A1P27658 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.76□□□□□ -0.37
COL8A1P27658 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
COL8A1P27658 AC138701.2-201ENST00000553634 226 ntBASIC12.76□□□□□ -0.37
COL8A1P27658 AC007952.4-201ENST00000573866 637 ntBASIC12.76□□□□□ -0.37
COL8A1P27658 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 PPIA-210ENST00000620047 827 ntTSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 AC002044.2-201ENST00000624910 970 ntBASIC12.76□□□□□ -0.37
COL8A1P27658 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
COL8A1P27658 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.76□□□□□ -0.37
COL8A1P27658 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
COL8A1P27658 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL8A1P27658 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 AC092384.3-202ENST00000564646 2873 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
COL8A1P27658 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
COL8A1P27658 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 SURF4-203ENST00000371991 715 ntTSL 3 BASIC12.75□□□□□ -0.37
COL8A1P27658 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 CTBP2P8-201ENST00000422584 1330 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.75□□□□□ -0.37
COL8A1P27658 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms