Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC14.66□□□□□ -0.06
VCANP13611 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 AL031590.1-202ENST00000641466 1737 ntBASIC14.66□□□□□ -0.06
VCANP13611 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.66□□□□□ -0.06
VCANP13611 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC14.66□□□□□ -0.06
VCANP13611 CACNA1C-AS1-203ENST00000544517 742 ntTSL 4 BASIC14.66□□□□□ -0.06
VCANP13611 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VCANP13611 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC14.66□□□□□ -0.06
VCANP13611 MIR7848-201ENST00000617402 101 ntBASIC14.66□□□□□ -0.06
VCANP13611 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VCANP13611 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
VCANP13611 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
VCANP13611 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.66□□□□□ -0.06
VCANP13611 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VCANP13611 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 MIR1249-201ENST00000408671 66 ntBASIC14.65□□□□□ -0.06
VCANP13611 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC14.65□□□□□ -0.06
VCANP13611 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC14.65□□□□□ -0.06
VCANP13611 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC14.65□□□□□ -0.06
VCANP13611 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 AL359091.4-201ENST00000610052 409 ntBASIC14.65□□□□□ -0.06
VCANP13611 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.65□□□□□ -0.06
VCANP13611 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VCANP13611 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VCANP13611 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VCANP13611 AC232323.1-201ENST00000540724 2099 ntBASIC14.65□□□□□ -0.06
VCANP13611 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.65□□□□□ -0.06
VCANP13611 DOC2GP-204ENST00000639052 2548 ntBASIC14.65□□□□□ -0.06
VCANP13611 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC14.65□□□□□ -0.06
VCANP13611 AC092903.1-201ENST00000466506 262 ntBASIC14.65□□□□□ -0.06
VCANP13611 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC14.65□□□□□ -0.06
VCANP13611 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.65□□□□□ -0.06
VCANP13611 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VCANP13611 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 ALG10-202ENST00000538927 571 ntTSL 5 BASIC14.65□□□□□ -0.06
VCANP13611 KLF17P1-201ENST00000547105 1126 ntBASIC14.65□□□□□ -0.06
VCANP13611 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC14.65□□□□□ -0.06
VCANP13611 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
VCANP13611 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VCANP13611 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.65□□□□□ -0.07
VCANP13611 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
VCANP13611 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC14.64□□□□□ -0.07
VCANP13611 TRIQK-219ENST00000523580 1630 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.64□□□□□ -0.07
VCANP13611 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
VCANP13611 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC14.64□□□□□ -0.07
VCANP13611 AC124944.3-201ENST00000607976 1304 ntBASIC14.64□□□□□ -0.07
VCANP13611 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC14.64□□□□□ -0.07
VCANP13611 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.64□□□□□ -0.07
VCANP13611 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC14.64□□□□□ -0.07
VCANP13611 LINP1-201ENST00000417112 917 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC14.64□□□□□ -0.07
VCANP13611 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 AC114488.2-208ENST00000591592 578 ntTSL 5 BASIC14.64□□□□□ -0.07
VCANP13611 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VCANP13611 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.64□□□□□ -0.07
VCANP13611 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms