Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 API5-203ENST00000455725 2257 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 HPD-204ENST00000543163 1709 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 FAM220BP-201ENST00000377689 816 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AC023274.1-201ENST00000418278 595 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 RHOQP3-201ENST00000437982 621 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 KRT18P2-201ENST00000447938 1258 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 PDPK2P-202ENST00000562415 1191 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 KRT18P8-201ENST00000581937 1246 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AL513190.1-201ENST00000621254 727 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 STK25-235ENST00000543554 2556 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 REM2-202ENST00000536884 1331 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AL360270.3-201ENST00000609118 1348 ntBASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms