Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
NPHP4O75161 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP4O75161 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
NPHP4O75161 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP4O75161 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
NPHP4O75161 RNA5SP491-201ENST00000362936 118 ntBASIC19.9■□□□□ 0.78
NPHP4O75161 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 MIR632-201ENST00000385193 94 ntBASIC19.9■□□□□ 0.78
NPHP4O75161 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC19.9■□□□□ 0.78
NPHP4O75161 AC087072.1-201ENST00000603727 421 ntBASIC19.9■□□□□ 0.78
NPHP4O75161 BX322562.1-201ENST00000617004 561 ntBASIC19.9■□□□□ 0.78
NPHP4O75161 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
NPHP4O75161 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP4O75161 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
NPHP4O75161 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
NPHP4O75161 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.89■□□□□ 0.78
NPHP4O75161 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC19.89■□□□□ 0.78
NPHP4O75161 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.78
NPHP4O75161 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.78
NPHP4O75161 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
NPHP4O75161 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
NPHP4O75161 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
NPHP4O75161 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP4O75161 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
NPHP4O75161 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC19.89■□□□□ 0.77
NPHP4O75161 RPL18AP15-201ENST00000430258 517 ntBASIC19.89■□□□□ 0.77
NPHP4O75161 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC19.89■□□□□ 0.77
NPHP4O75161 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC19.89■□□□□ 0.77
NPHP4O75161 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC19.89■□□□□ 0.77
NPHP4O75161 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP4O75161 RPL29P2-201ENST00000488409 460 ntBASIC19.89■□□□□ 0.77
NPHP4O75161 MARK2P17-201ENST00000498560 841 ntBASIC19.89■□□□□ 0.77
NPHP4O75161 AC112250.1-201ENST00000504640 745 ntBASIC19.89■□□□□ 0.77
NPHP4O75161 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP4O75161 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP4O75161 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC19.89■□□□□ 0.77
NPHP4O75161 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC19.89■□□□□ 0.77
NPHP4O75161 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC19.89■□□□□ 0.77
NPHP4O75161 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP4O75161 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
NPHP4O75161 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP4O75161 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP4O75161 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP4O75161 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP4O75161 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
NPHP4O75161 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
NPHP4O75161 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP4O75161 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
NPHP4O75161 CCL19-202ENST00000378800 414 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP4O75161 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC19.88■□□□□ 0.77
NPHP4O75161 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC19.88■□□□□ 0.77
NPHP4O75161 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 IFNL3P1-201ENST00000595082 501 ntBASIC19.88■□□□□ 0.77
NPHP4O75161 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
NPHP4O75161 AC106782.5-201ENST00000616011 337 ntBASIC19.88■□□□□ 0.77
NPHP4O75161 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
NPHP4O75161 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
NPHP4O75161 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
NPHP4O75161 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
NPHP4O75161 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP4O75161 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms