Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12□□□□□ -0.49
SSSCA1O60232 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12□□□□□ -0.49
SSSCA1O60232 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
SSSCA1O60232 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
SSSCA1O60232 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12□□□□□ -0.49
SSSCA1O60232 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
SSSCA1O60232 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC11.99□□□□□ -0.49
SSSCA1O60232 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 SPDYE7P-202ENST00000420373 878 ntBASIC11.99□□□□□ -0.49
SSSCA1O60232 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC11.99□□□□□ -0.49
SSSCA1O60232 NMU-202ENST00000505262 693 ntTSL 3 BASIC11.99□□□□□ -0.49
SSSCA1O60232 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 AC051619.7-201ENST00000568314 623 ntBASIC11.99□□□□□ -0.49
SSSCA1O60232 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC11.99□□□□□ -0.49
SSSCA1O60232 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
SSSCA1O60232 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC11.99□□□□□ -0.49
SSSCA1O60232 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC11.99□□□□□ -0.49
SSSCA1O60232 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 AL513210.1-201ENST00000629608 234 ntBASIC11.99□□□□□ -0.49
SSSCA1O60232 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC11.99□□□□□ -0.49
SSSCA1O60232 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC11.99□□□□□ -0.49
SSSCA1O60232 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
SSSCA1O60232 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 GRAMD4P3-201ENST00000621665 1669 ntBASIC11.99□□□□□ -0.49
SSSCA1O60232 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
SSSCA1O60232 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 TP73-207ENST00000378290 1831 ntTSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
SSSCA1O60232 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
SSSCA1O60232 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.99□□□□□ -0.49
SSSCA1O60232 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC11.99□□□□□ -0.49
SSSCA1O60232 PCDHB18P-202ENST00000526308 3197 ntBASIC11.99□□□□□ -0.49
SSSCA1O60232 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SSSCA1O60232 CSPG4P11-201ENST00000560634 4910 ntBASIC11.99□□□□□ -0.49
SSSCA1O60232 AC073957.3-201ENST00000609998 6758 ntBASIC11.99□□□□□ -0.49
SSSCA1O60232 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
SSSCA1O60232 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SSSCA1O60232 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
SSSCA1O60232 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
SSSCA1O60232 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 RPL30-202ENST00000396070 440 ntTSL 2 BASIC11.98□□□□□ -0.49
SSSCA1O60232 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms