Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MYH4-201ENST00000255381 6016 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 HADH-202ENST00000403312 1752 ntTSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 KCND3-203ENST00000369697 7396 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 HAL-202ENST00000538703 2637 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 MTR-205ENST00000535889 10405 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 NBN-201ENST00000265433 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 TFCP2L1-201ENST00000263707 9292 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 MIR346-201ENST00000362234 95 ntBASIC11.83□□□□□ -0.52
HMGB3O15347 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HMGB3O15347 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC11.83□□□□□ -0.52
HMGB3O15347 SPCS2P4-201ENST00000436160 681 ntBASIC11.83□□□□□ -0.52
HMGB3O15347 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 SLED1-202ENST00000512051 380 ntBASIC11.83□□□□□ -0.52
HMGB3O15347 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 TPM1-226ENST00000560959 925 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 INO80E-210ENST00000567705 880 ntTSL 3 BASIC11.83□□□□□ -0.52
HMGB3O15347 IGHV3OR16-6-201ENST00000568775 360 ntBASIC11.83□□□□□ -0.52
HMGB3O15347 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC11.83□□□□□ -0.52
HMGB3O15347 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC11.83□□□□□ -0.52
HMGB3O15347 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 AC004241.5-201ENST00000623870 2448 ntBASIC11.83□□□□□ -0.52
HMGB3O15347 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 PNPLA7-202ENST00000406427 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HMGB3O15347 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC11.83□□□□□ -0.52
HMGB3O15347 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 C4orf33-201ENST00000281146 6170 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 PCDH12-201ENST00000231484 6562 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC11.83□□□□□ -0.52
HMGB3O15347 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HMGB3O15347 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
HMGB3O15347 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 NBPF1-203ENST00000430580 5932 ntAPPRIS P5 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 MED12-203ENST00000374102 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.82□□□□□ -0.52
HMGB3O15347 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 AC104457.1-201ENST00000401024 814 ntBASIC11.82□□□□□ -0.52
HMGB3O15347 FO393414.2-201ENST00000405153 598 ntBASIC11.82□□□□□ -0.52
HMGB3O15347 USP40-206ENST00000443711 628 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC11.82□□□□□ -0.52
HMGB3O15347 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms